Research Papers

 

1. Rani, U., Matlovicova, K., Pandey, B.W., Vaishnav, H.K., Saini, R., Dey, S.K., Gozner, M., Bujdoso, Z., & Mishra, P.K. (2025). Informal urban livelihoods and environmental inequality: Occupational health risks among waste pickers in Ghaziabad, India. Geojournal of Tourism and Geosites, 61(3), 1859–1874. Impact Factor: 1

2. Saini KK, Upadhyay RK, Diksha Rani., Shahjahan, Kaur S, Dey SK*, Kumar R. “Greener synthesis of multi-functionalized biologically active isatin tagged dihydropyrimidine derivatives and assessment of their anti-breast cancer activity indicating ethyl 4-(3-chlorophenyl)-2-((prop-2-yn-1-yloxy)methyl)-4H-benzo[4,5]thiazolo[3,2-a]pyrimidine-3-carboxylate as a potent anti-cancer agent”. 2024, Communicated, *Co-corresponding author.

3. Upadhyay RK, Saini KK, Diksha Rani, Gupta S, Shahjahan, Debi. P. Sarkar, Dey SK*, Kumar R. “Design, synthesis, and biological evaluation of newer triazole based Spiro-oxindoles as potent anti-breast cancer agent”. 2024, Communicated, *Co-corresponding author.

4. Bandyopadhayaya S, Yadav P, Kumari M, Dey SK, Mandal CC. Multifaceted in Silico Screening Strategies Identifies Potent Inhibitors Facilitating Inhibition of ZNF726 Activity in Breast Cancer. Chemical Biology & Drug Design 2025; 105: e70144. https://doi.org/10.1111/cbdd.70144 Impact Factor: 2.5

5. Zehra, Z., Bano, S., Hasan, Z., Choudhir, G., Shamsi, A., Shahwan, M., Dey, S.K. and Islam, A., 2025. Inhibitory potential of gallic acid against SARS-CoV-2 main protease: A structure-function insight using combined spectroscopic and computational approach. Journal of Molecular Liquids, p.128007. https://doi.org/10.1016/j.molliq.2025.128007 Impact Factor: 5.2

6. Bano, S., Singh, J., Zehra, Z., Sulaimani, M.N., Mohammad, T., Yumlembam, S., Hassan, M.I., Islam, A. and Dey, S.K., 2025. Biochemical Screening of Phytochemicals and Identification of Scopoletin as a Potential Inhibitor of SARS-CoV-2 Mpro, Revealing Its Biophysical Impact on Structural Stability. Viruses, 17(3), p.402. https://doi.org/10.3390/v17030402 Impact Factor: 3.5

7. Shahjahan, Joy Kumar Dey, Sanjay Kumar Dey. (2023). Competitive binding of ribavirin, velpatasvir, and remdesivir to the active site of DNA polymerase can make them repurposable drugs to combat Monkeypox. International Journal of Scientific Development and Research, 8(10), 771–784. https://doi.org/10.5281/zenodo.10676365, Impact Factor: 8.15

8. Saini, M., Upadhyay, N., Dhiman, K., Manjhi, S.K., Kattuparambil, A.A., Ghoshal, A., Arya, R., Dey, S.K., Sharma, A., Aduri, R. Thelma, B.K., Kundu S. 2024. ARL15, a GTPase implicated in rheumatoid arthritis, potentially repositions its truncated N-terminus as a function of guanine nucleotide binding. International Journal of Biological Macromolecules, 254, p.127898. Impact Factor: 8.2

9. Shreetama Bandyopadhayaya, Pooja Yadav, Ankit Sharma, Sanjay Kumar Dey, Alo Nag, Rekha Maheshwari, Bridget M. Ford, Chandi C. Mandal (16-05-2023). Oncogenic role of an uncharacterized cold-induced zinc finger protein 726 in breast cancer. J of Cellular Biochemistry. 124(6), 889–906; https://doi.org/10.1002/jcb.30417, Impact Factor:  4.48

10. Yadav R, Courouble VV, Dey SK, Harrison JJEK, Timm J, Hopkins JB, Slack RL, Sarafianos SG, Ruiz FX, Griffin PR, and Arnold E (09-12-2022). Biochemical and structural insights into SARS-CoV-2 polyprotein processing by Mpro. Science Advances, DOI: http://dx.doi.org/10.1126/sciadv.add2191, Impact Factor: 14.14

11. Far BF, Bokov D, Widjaja G, Budi HS, Abdelbasset WK, Javanshir S, Seif F, Pazoki-Toroudi H, and Dey SK (2022). Metronidazole, acyclovir and tetrahydrobiopterin may be promising to treat COVID-19 patients, through interaction with interleukin-12, Journal of Biomolecular Structure and Dynamics, https://doi.org/10.1080/07391102.2022.2064917 , Impact Factor: 5.24

12. Courouble VV*, Dey SK*, Yadav R*, Timm J, Harrison JJ, Ruiz FX, Arnold E, Griffin PR. Revealing the Structural Plasticity of SARS-CoV-2 nsp7 and nsp8 Using Structural Proteomics. Journal of the American Society for Mass Spectrometry. (2021) *co-first author. https://doi.org/10.1021/jasms.1c00086 , Impact Factor: 3.26

13. Dey SK, Saini M, Dhembla C, Bhatt S, Rajesh A S, Anand V, Das HK, and Kundu S.  Suramin, Penciclovir and Anidulafungin exhibit potential in the treatment of COVID-19 via binding to nsp12 of SARS-CoV-2. Journal of Biomolecular Structure and Dynamics. (2021) https://doi.org/10.1080/07391102.2021.2000498 , Impact Factor: 5.24

14. Rizwan T, Kothidar A, Meghwani H, Sharma V, Shobhawat R, Saini R, Vaishnav HK, Singh V, Pratap M, Sihag H, Dey JK, and Dey SK. Comparative analysis of SARS-CoV-2 envelope viroporin mutations from COVID-19 deceased and surviving patients revealed implications on its ion-channel activities and correlation with patient mortality. Journal of Biomolecular Structure and Dynamics. (2021) 21:1-6. https://doi.org/10.1080/07391102.2021.1944319  , Impact Factor: 5.24

15. Dey SK, Bhaduri S, and Midya T. An analysis on the divergence of Chironomid spp. based on the study of 18S rRNA and polytene chromosome organization in the species revealing the role of environment on speciation. The Journal of Basic and Applied Zoology. (2021); 82(1):1-2. https://doi.org/10.1186/s41936-021-00215-0 , Impact Factor: 1

16. Pandey AK, Saxena A, Dey SK, Kanjilal M, Kumar U, Thelma BK. Correlation between an intronic SNP genotype and ARL15 level in rheumatoid arthritis. Journal of Genetics. (30-04-2021) 100(2):1-6. https://doi.org/10.1007/s12041-021-01286-2 , Impact Factor: 1.5

17. Dey JK, Dey SK. SARS-CoV-2 Pandemic, COVID-19 Case Fatality Rates and Deaths per Million Population in India. Journal of Bioinformatics, Computational and Systems Biology. (2020); 2(1):110, Impact Factor: 1

18. Dey JK*, Dey SK* and Sihag H. Current Insights into the Novel Coronavirus Disease 2019 (COVID-19) and Its Homoeopathic Management. Homœopathic Links, (2020); 33(03):171–181.  DOI: https://doi.org/10.1055/s-0040-1715636 . *Equal contributions, Impact Factor: 1

19. Kumar P, Nag TC, Jha KA, Dey SK, Kathpalia P, Maurya M, Gupta CL, Bhatia J, Roy TS, Wadhwa S. Experimental oral iron administration: Histological investigations and expressions of iron handling proteins in rat retina with aging. Toxicology. (2017); 392:22-31. https://doi.org/10.1016/j.tox.2017.10.005 , Impact Factor: 4.57

20. Punchaichira TJ, Dey SK, Mukhopadhyay A, Kundu S, Thelma BK. Characterization of SNPs in the dopamine-β-hydroxylase gene providing new insights into its structure-function relationship. Neurogenetics. (2017); 18(3):155-68. https://doi.org/10.1007/s10048-017-0519-3 , Impact Factor:3

21. Jangir DK, Dey SK, Kundu S, Mehrotra R. Assessment of amsacrine binding with DNA using UV–visible, circular dichroism and Raman spectroscopic techniques. Journal of Photochemistry and Photobiology B: Biology. (2012); 114:38-43. https://doi.org/10.1016/j.jphotobiol.2012.05.005 , Impact Factor: 6.81

22. Dey SK, Ganguli S, Roy P, Basu P, Chakraborty HJ and Datta A. Pseudoknots in Human snRNPs. International Journal of Bioinformatics Research, 3(1): 194-199, (2011), Impact Factor: 1

23. Dey SK, Ganguli S, Basu P, Roy P, and Datta, A. (2010). Lysine richness in human snurps possible sites for electrophilic attacks. Bioinformation, 4(9): 409, DOI: 10.6026/97320630004409, Impact Factor: 1

24. Ganguli S, Dey SK, Dhar P, Basu P, Roy P, and Datta A. Catalytic RNA world relics in Dicer RNAs. International Journal of Genetics. (2010); 2(1):8, Impact Factor: 1

25. Dey SK, Sarkar NK and Mukherjee TK. A study of amylase activity in silk moth gut". Journal of Natural History (India), 5 (1): 41-45, (2009), Impact Factor: 

 

Review Articles

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1. Das, S., Nath, S., Shahjahan, and Dey SK. Plausible mechanism of drug resistance and side-effects of COVID-19 therapeutics: a bottleneck for its eradication. DARU J Pharm Sci (2024). https://doi.org/10.1007/s40199-024-00524-z , Impact factor: 2.5

2. Dey, S.K., Kumar, S., Rani, D., Maurya, S.K., Banerjee, P., Verma, M. and Senapati, S., 2023. Implications of vitamin D deficiency in systemic inflammation and cardiovascular health. Critical Reviews in Food Science and Nutrition, pp.1-18, https://doi.org/10.1080/10408398.2023.2224880, Impact Factor: 11.2

3. Choudhury, SP, Bano, S, Sen, S, …. Dey SK* and Sharma V., 2022. Altered Neural Cell Junctions and Ion-channels Leading to Disrupted Neuron Communication: Some Novel Perspectives in the Spread of Parkinson’s Disease. NPG Parkinson's Disease. *Corresponding author, https://www.nature.com/articles/s41531-022-00324-9, Impact Factor: 9.3

4. Kumar, G.*, Dey, S.K.* and Kundu, S., 2022. Corrigendum to Herbs and their bioactive ingredients in cardio-protection: underlying molecular mechanisms and evidences from clinical studies. Phytomedicine, p.153828. *equal contribution. https://doi.org/10.1016/j.phymed.2021.153828, Impact Factor: 7.9

5. Kumar, G.*, Dey, S.K.* and Kundu, S., 2021. Herbs and their bioactive ingredients in cardio-protection: underlying molecular mechanisms and evidences from clinical studies. Phytomedicine, p.153753. *equal contribution. https://doi.org/10.1016/j.phymed.2021.153753, Impact Factor: 7.9

6. Dey SK, Saini M, Prabhakar P, and Kundu S. Dopamine β hydroxylase as a potential drug target to combat hypertension. Expert Opinion on Investigational Drugs. 2020; 29(9):1043-1057. https://doi.org/10.1080/13543784.2020.1795830  , Impact Factor: 6.5

7. Kumar G, Dey SK, and Kundu S. Functional implications of vascular endothelium in regulation of endothelial nitric oxide synthesis to control blood pressure and cardiac functions. Life Sciences, Volume: 259, article number: 118377, DOI: https://doi.org/10.1016/j.lfs.2020.118377  (2020), Impact Factor: 6.78

8. Dey, JK, Mukherjee A, Dey SK, Pramanik A, Giri S, and Pratap M. "A systematic review on the efficacies and therapeutic interventions of homoeopathic medicines in combating viral disorders with implications in the currently undergoing homoeopathic treatment efforts of SARS-CoV-2 infection (COVID-19)." International Journal of High Dilution Research, 19 (3): 27-39 (2020).  https://doi.org/10.51910/ijhdr.v19i3.1033, Impact Factor: 1

 

Popular Science / Other Article

 

1. Dey SK, and Kundu S. The Indian Wizard of Biophysics: Remembering GN Ramachandran in the International Year of Crystallography. Journal of Proteins & Proteomics. 2014 Apr 30; 5(1). https://serialsjournals.com/abstract/14745_7.pdf , Impact Factor: 1

 

Book Chapters

 

1. Bano, S., Ahmedi, S., Manzoor, N., Dey, S.K. (2024). Toxicology of Antifungal and Antiviral Drugs. In: Manzoor, N. (eds) Advances in Antifungal Drug Development. Springer, Singapore.  Page: 633-652; https://doi.org/10.1007/978-981-97-5165-5_24

2. Diksha Rani, Smaranjot Kaur, Shahjahan, Joy Kumar Dey, Sanjay Kumar Dey. Engineering immune response to regulate cardiovascular disease and cancer. Advances in Protein Chemistry and Structural Biology. Volume 140, 2024, Pages 381-417; 2024. DOI: https://doi.org/10.1016/bs.apcsb.2023.12.004, Impact Factor: 5.4

3. Shahjahan, Dey JK, Dey SK. Translational bioinformatics approach to combat cardiovascular disease and cancers. Advances in Protein Chemistry and Structural Biology. 2024; 139:221-261. https://doi.org/10.1016/bs.apcsb.2023.11.006 . Impact Factor: 5.4

4. Shahjahan, Sanjay Kumar Dey, Role of miRNA in monkeypox viral diagnosis and therapeutic developments, Editor(s): Vijay Kumar Prajapati, Rupal Ojha, MicroRNA in Human Infectious Diseases, Academic Press, 2024, Pages 201-219, ISBN 9780323996617, https://doi.org/10.1016/B978-0-323-99661-7.00002-3 .

5. Kumar, G*, Dey, S.K.*, and Kundu, S. (2023). Nitric Oxide and Cardiovascular Diseases: Cardioprotection, Complications and Therapeutics. In: Ray, A., Gulati, K. (eds) Nitric Oxide: From Research to Therapeutics. Advances in Biochemistry in Health and Disease, vol 22. Springer, Cham. *Equal contributions. https://doi.org/10.1007/978-3-031-24778-1_3

6. Dey JK, Ahmedi, S, Jain, N, Bano, S, Manzoor N, and Dey SK. Effect of the Changing Climate and Urban Ecology on Spreading of Infectious Diseases Including SARS-CoV-2. In: Bhadouria, R, Upadhyay, S, Tripathi, S and Singh, P (eds.) Urban Ecology and Global Climate Change. John Wiley & Sons Limited, located at The Atrium, Southern Gate, West Sussex PO19 8SQ, United Kingdom. (2022) ISBN: 9781119807186, https://doi.org/10.1002/9781119807216.ch12 .

7. Choudhury, SP, Arora, A, Jain, J. and Dey SK. Climate change, urbanization and their impact on increased occurrence of cardiometabolic syndrome. In: Bhadouria, R, Upadhyay, S, Tripathi, S and Singh, P (eds.) Urban Ecology and Global Climate Change. John Wiley & Sons Limited, located at The Atrium, Southern Gate, West Sussex PO19 8SQ, United Kingdom. (2022) ISBN: 9781119807186, https://doi.org/10.1002/9781119807216.ch2 .

8. Dey SK, Senapati S. (2021) Insulin and Insulin-Like Growth Factor-1 Associated Cancers. In: Kumar S., Gupta S. (eds) Obesity and Cancer. Springer, Singapore. https://doi.org/10.1007/978-981-16-1846-8_3

9. Dey SK, Senapati S. (2021) In Vivo Models for Obesity and Obesity Related Carcinogenesis. In: Kumar S., Gupta S. (eds) Obesity and Cancer. Springer, Singapore. https://doi.org/10.1007/978-981-16-1846-8_14 

10. Kundu S, Saini M, Dey SK, Kundu S. Dopamine Beta Hydroxylase: An Enzyme with Therapeutic Potential to Combat Neural and Cardiovascular Diseases. In Frontiers in Protein Structure, Function, and Dynamics 2020 (pp. 339-357). Springer, Singapore. https://doi.org/10.1007/978-981-15-5530-5_14